Hello Melisa Ramos
I'm glad that you were able to resolve your issue and thank you for posting your solution so that others experiencing the same thing can easily reference this!
Since the Microsoft Q&A community has a policy that "The question author cannot accept their own answer. They can only accept answers by others", I'll repost your solution.
Please click "Accept" the answer as original posters help the community find answers faster by identifying the correct answer.
Issue: How to Configure Azure Front Door with custom domain and 2 app services as origins
Resolution: I figured out what the issue was, I had to configure authentication settings and exclude the health probe path from authentication.
I followed this as a reference: https://azure.github.io/AppService/2021/03/26/Secure-resilient-site-with-custom-domain.html
Please don’t forget to close the thread by clicking "Accept the answer" wherever the information provided helps you, as this can be beneficial to other community members.